I put the 1000uF cap in my original DUO-RX and tested it briefly. It worked, after a format of the save data. I imagine that the chips have to "power up" to hold the data? I only played it for 50 minutes or so. I had it hooked up to my loungeroom plasma and it was just too damn ugly to look at for an extended period!
I still had Monbit in the CD drive, so annoyed I lost my data for that game. I was really enjoying it. Then I put in Gates of Thunder and played one stage followed by Travellers! for about 35 minutes.
I've already installed them in the IFU and DUO I am modding, but I was thinking of taking out the DUO one because it is over one leg of a cap and am worried about something shorting out. I will look to buy one of the upright caps shown in this thread, rather than the short, squat round (probably 20mms in diametre) cap I have in there now. I also thought about desoldering it and putting some tape around the area it sits above to prevent contact between the caps.